order · mtDNA statistics

Centrarchiformes

24 species in 7 families. Every region of their mitochondrial genomes, side by side.

Group

species

45.5%

mean GC, whole genome

SD 2.0, range 38.4–48.2%

16,504

median genome length, bp

Range 16,409–17,002 bp

families

Regions

GC content of each region across Centrarchiformes, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	24	45.52%	2.00	0.044	38.44%Elassoma alabamae	45.91%	48.16%Lepomis megalotis	0.43	0.04
Protein-coding	24	45.96%	2.37	0.052	37.63%Elassoma alabamae	46.38%	49.00%Lepomis megalotis	0.43	0.03
All rRNA	24	46.09%	1.12	0.024	42.00%Elassoma alabamae	46.44%	47.44%Terapon jarbua	0.32	0.13
All tRNA	24	45.51%	1.60	0.035	40.76%Elassoma alabamae	45.62%	47.90%Lepomis gibbosus	0.49	0.01
12S rRNA	24	47.52%	1.02	0.021	43.73%Elassoma alabamae	47.58%	49.15%Percilia irwini	0.28	0.18
16S rRNA	24	45.29%	1.30	0.029	41.01%Elassoma alabamae	45.62%	46.88%Terapon jarbua	0.30	0.15
D-loop	24	37.44%	1.96	0.052	33.57%Elassoma alabamae	37.73%	42.47%Pomoxis annularis	0.16	0.45
ND1	24	46.40%	2.60	0.056	37.85%Elassoma alabamae	46.28%	49.85%Ambloplites rupestris	0.35	0.09
ND2	24	47.27%	2.35	0.050	38.66%Elassoma alabamae	47.26%	50.10%Lepomis megalotis	0.41	0.05
COX1	24	45.72%	2.15	0.047	38.49%Elassoma alabamae	46.48%	48.42%Lepomis megalotis	0.35	0.09
COX2	24	43.89%	2.08	0.047	38.06%Elassoma alabamae	43.63%	48.34%Lepomis megalotis	0.30	0.15
ATP8	24	45.39%	2.86	0.063	37.50%Elassoma alabamae	45.83%	50.60%Lepomis gibbosus	0.40	0.06
ATP6	24	45.24%	3.42	0.076	35.09%Elassoma alabamae	46.01%	49.56%Ambloplites rupestris	0.44	0.03
COX3	24	47.12%	2.22	0.047	39.75%Elassoma alabamae	47.26%	50.19%Ambloplites rupestris	0.44	0.03
ND3	24	47.46%	3.65	0.077	36.10%Elassoma alabamae	47.71%	52.44%Ambloplites rupestris	0.47	0.02
ND4L	24	49.17%	2.82	0.057	42.09%Elassoma alabamae	48.48%	54.21%Lepomis auritus	0.43	0.04
ND4	24	46.12%	2.92	0.063	36.28%Elassoma alabamae	46.42%	49.96%Archoplites interruptus	0.32	0.13
ND5	24	44.32%	2.29	0.052	36.38%Elassoma alabamae	44.62%	48.07%Lepomis megalotis	0.47	0.02
ND6	24	45.49%	2.59	0.057	37.36%Elassoma alabamae	46.07%	49.23%Lepomis megalotis	0.29	0.17
CYTB	24	46.68%	2.84	0.061	38.12%Elassoma alabamae	47.28%	51.01%Ambloplites rupestris	0.51	0.01

Families of Centrarchiformes

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Families of Centrarchiformes

Centrarchidae	11	46.76%	0.82	0.018	45.56%Centrarchus macropterus	46.50%	48.16%Lepomis megalotis	0.20	0.55
Percichthyidae	6	44.73%	1.31	0.029	42.92%Bostockia porosa	44.89%	46.35%Nannatherina balstoni	−0.55	0.26
Sinipercidae	2	45.37%	0.04	0.001	45.34%Siniperca knerii	45.37%	45.39%Siniperca chuatsi	–	–
Elassomatidae	1	38.44%	–	–	38.44%Elassoma alabamae	38.44%	38.44%Elassoma alabamae	–	–
Terapontidae	1	46.44%	–	–	46.44%Terapon jarbua	46.44%	46.44%Terapon jarbua	–	–
Girellidae	1	43.35%	–	–	43.35%Girella punctata	43.35%	43.35%Girella punctata	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Centrarchiformes

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Centrarchiformes taxon page Plot GC content against GC skew All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.