Amblyraja radiata
Thorny skate
GC content
40.28%
Whole genome
Non-coding
1,182 bp
D-loop 1,064 bp
Where Thorny skate sits among 2,335 species
Whole-genome GC content against maximum lifespan. Thorny skate has the 1,155th longest lifespan of them.
- This species
- Other sharks and rays
- Other classes
Base composition
Whole genome16,783 bp
- GC skew (G − C) / (G + C)
- −0.287
- AT skew (A − T) / (A + T)
- +0.016
Life history
- Maximum lifespan
- 16 years
- Adult weight
- 2.3 kg
- Female sexual maturity
- 11 years
- Male sexual maturity
- 4 years
- Litter or clutch size
- 31
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01822)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Updated in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,783 bp
Protein-coding11,414 bp
12S rRNA967 bp
16S rRNA1,678 bp
All tRNA1,545 bp
D-loop1,064 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 41.74% | −0.391 | −0.032 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 42.22% | −0.502 | +0.045 | |||||
| COX1Cytochrome c oxidase subunit I | 1,557 bp | 41.55% | −0.209 | −0.103 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 38.35% | −0.200 | +0.061 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 37.50% | −0.587 | +0.048 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 39.04% | −0.416 | −0.046 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 44.28% | −0.253 | −0.082 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 45.58% | −0.313 | −0.162 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 42.76% | −0.433 | −0.106 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 40.77% | −0.389 | −0.037 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 39.05% | −0.400 | −0.012 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 37.38% | −0.464 | +0.372 | |||||
| CYTBCytochrome b | 1,143 bp | 42.87% | −0.371 | −0.081 | |||||
| 12S rRNA12S ribosomal RNA | 967 bp | 41.47% | −0.082 | +0.110 | |||||
| 16S rRNA16S ribosomal RNA | 1,678 bp | 38.38% | −0.084 | +0.137 | |||||
| D-loopControl region (D-loop) | 1,064 bp | 35.15% | −0.182 | 0.000 |
Codon usage
Counts per codon, darker is more frequent3,811 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU129
UUC107
Leu L17.8%
UUA182
UUG27
CUU136
CUC149
CUA155
CUG29
Ile I8.9%
AUU190
AUC149
Met M4.3%
AUA125
AUG37
Val V4.7%
GUU56
GUC42
GUA66
GUG16
Ser S6.6%
UCU60
UCC63
UCA76
UCG4
AGU13
AGC34
Pro P5.5%
CCU50
CCC64
CCA93
CCG4
Thr T7.7%
ACU59
ACC99
ACA129
ACG8
Ala A7.4%
GCU71
GCC116
GCA87
GCG8
Tyr Y3.1%
UAU57
UAC63
His H2.7%
CAU36
CAC66
Gln Q2.6%
CAA89
CAG11
Asn N3.8%
AAU75
AAC71
Lys K2.2%
AAA73
AAG12
Asp D1.8%
GAU40
GAC30
Glu E2.7%
GAA82
GAG19
Cys C0.6%
UGU11
UGC12
Trp W3.1%
UGA106
UGG13
Arg R1.8%
CGU16
CGC17
CGA32
CGG5
Gly G6.1%
GGU43
GGC74
GGA72
GGG42
Stop 0.3%
UAA9
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_000893.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (40.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,036 | 967 bp | + | 41.5% |
| tRNA-Val | Transfer RNA | 1,037 | 1,108 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,109 | 2,786 | 1,678 bp | + | 38.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,787 | 2,860 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,861 | 3,835 | 975 bp | + | 41.7% |
| tRNA-Ile | Transfer RNA | 3,836 | 3,905 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,905 | 3,976 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 3,978 | 4,046 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,047 | 5,093 | 1,047 bp | + | 42.2% |
| tRNA-Trp | Transfer RNA | 5,093 | 5,161 | 69 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,163 | 5,231 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,232 | 5,304 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,336 | 5,402 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,403 | 5,472 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,474 | 7,030 | 1,557 bp | + | 41.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,031 | 7,101 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,101 | 7,170 | 70 bp | + | – |
| COX2 | Protein-coding gene | 7,176 | 7,866 | 691 bp | + | 38.4% |
| tRNA-Lys | Transfer RNA | 7,867 | 7,939 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,941 | 8,108 | 168 bp | + | 37.5% |
| ATP6 | Protein-coding gene | 8,099 | 8,782 | 684 bp | + | 39.0% |
| COX3 | Protein-coding gene | 8,785 | 9,570 | 786 bp | + | 44.3% |
| tRNA-Gly | Transfer RNA | 9,572 | 9,641 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,642 | 9,992 | 351 bp | + | 45.6% |
| tRNA-Arg | Transfer RNA | 9,991 | 10,060 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,061 | 10,357 | 297 bp | + | 42.8% |
| ND4 | Protein-coding gene | 10,351 | 11,731 | 1,381 bp | + | 40.8% |
| tRNA-His | Transfer RNA | 11,732 | 11,800 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,801 | 11,867 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,869 | 11,940 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,941 | 13,776 | 1,836 bp | + | 39.1% |
| ND6 | Protein-coding gene | 13,773 | 14,291 | 519 bp | − | 37.4% |
| tRNA-Glu | Transfer RNA | 14,293 | 14,361 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,365 | 15,507 | 1,143 bp | + | 42.9% |
| tRNA-Thr | Transfer RNA | 15,511 | 15,583 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,651 | 15,719 | 69 bp | − | – |
| D-loop | Control region | 15,720 | 16,783 | 1,064 bp | – | 35.2% |