Bathyraja taranetzi
Mud skate
GC content
33.65%
Whole genome
Non-coding
1,158 bp
Including the D-loop
Where Mud skate sits among 2,335 species
Whole-genome GC content against maximum lifespan. Mud skate has the 1,312th longest lifespan of them.
- This species
- Other sharks and rays
- Other classes
Base composition
Whole genome16,751 bp
- GC skew (G − C) / (G + C)
- −0.212
- AT skew (A − T) / (A + T)
- −0.027
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,751 bp
Protein-coding11,411 bp
12S rRNA960 bp
16S rRNA1,676 bp
All tRNA1,546 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 33.23% | −0.309 | −0.069 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 32.70% | −0.404 | −0.014 | |||||
| COX1Cytochrome c oxidase subunit I | 1,557 bp | 35.84% | −0.079 | −0.159 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 33.14% | −0.170 | +0.039 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 25.60% | −0.442 | −0.024 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 30.70% | −0.371 | −0.118 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 37.66% | −0.162 | −0.090 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 34.67% | −0.223 | −0.228 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 37.37% | −0.387 | −0.140 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 33.02% | −0.325 | −0.088 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 32.52% | −0.323 | −0.069 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 32.95% | −0.474 | +0.299 | |||||
| CYTBCytochrome b | 1,143 bp | 33.07% | −0.249 | −0.148 | |||||
| 12S rRNA12S ribosomal RNA | 960 bp | 38.23% | −0.035 | +0.069 | |||||
| 16S rRNA16S ribosomal RNA | 1,676 bp | 35.32% | −0.027 | +0.114 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.4%
UUU175
UUC69
Leu L17.0%
UUA280
UUG19
CUU175
CUC59
CUA106
CUG10
Ile I9.7%
AUU288
AUC80
Met M5.1%
AUA159
AUG35
Val V4.4%
GUU75
GUC10
GUA75
GUG9
Ser S6.7%
UCU65
UCC40
UCA98
UCG6
AGU35
AGC13
Pro P5.4%
CCU60
CCC25
CCA120
CCG1
Thr T7.4%
ACU92
ACC51
ACA135
ACG2
Ala A7.0%
GCU100
GCC76
GCA88
GCG2
Tyr Y3.3%
UAU103
UAC22
His H2.6%
CAU62
CAC38
Gln Q2.6%
CAA93
CAG6
Asn N3.9%
AAU108
AAC40
Lys K2.2%
AAA75
AAG10
Asp D1.9%
GAU59
GAC15
Glu E2.6%
GAA91
GAG9
Cys C0.7%
UGU20
UGC5
Trp W3.1%
UGA104
UGG15
Arg R1.8%
CGU17
CGC14
CGA34
CGG5
Gly G5.8%
GGU86
GGC20
GGA88
GGG28
Stop 0.2%
UAA8
UAG1
AGA0
AGG0
Genome map
37 annotated features in NC_082801.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (33.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,029 | 960 bp | + | 38.2% |
| tRNA-Val | Transfer RNA | 1,030 | 1,101 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,102 | 2,777 | 1,676 bp | + | 35.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,778 | 2,852 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,853 | 3,827 | 975 bp | + | 33.2% |
| tRNA-Ile | Transfer RNA | 3,828 | 3,897 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,897 | 3,968 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 3,969 | 4,037 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,038 | 5,083 | 1,046 bp | + | 32.7% |
| tRNA-Trp | Transfer RNA | 5,084 | 5,152 | 69 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,154 | 5,222 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,223 | 5,295 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,329 | 5,395 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,396 | 5,465 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,467 | 7,023 | 1,557 bp | + | 35.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,024 | 7,094 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,095 | 7,163 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,169 | 7,859 | 691 bp | + | 33.1% |
| tRNA-Lys | Transfer RNA | 7,860 | 7,932 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,934 | 8,101 | 168 bp | + | 25.6% |
| ATP6 | Protein-coding gene | 8,092 | 8,775 | 684 bp | + | 30.7% |
| COX3 | Protein-coding gene | 8,778 | 9,563 | 786 bp | + | 37.7% |
| tRNA-Gly | Transfer RNA | 9,565 | 9,634 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,635 | 9,983 | 349 bp | + | 34.7% |
| tRNA-Arg | Transfer RNA | 9,984 | 10,052 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,053 | 10,349 | 297 bp | + | 37.4% |
| ND4 | Protein-coding gene | 10,343 | 11,723 | 1,381 bp | + | 33.0% |
| tRNA-His | Transfer RNA | 11,724 | 11,792 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,793 | 11,859 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,860 | 11,931 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,932 | 13,767 | 1,836 bp | + | 32.5% |
| ND6 | Protein-coding gene | 13,764 | 14,282 | 519 bp | − | 33.0% |
| tRNA-Glu | Transfer RNA | 14,284 | 14,352 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,356 | 15,498 | 1,143 bp | + | 33.1% |
| tRNA-Thr | Transfer RNA | 15,501 | 15,573 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,581 | 15,650 | 70 bp | − | – |