Beringraja binoculata
Big skate
GC content
41.72%
Whole genome
Non-coding
1,309 bp
Including the D-loop
Where Big skate sits among 2,335 species
Whole-genome GC content against maximum lifespan. Big skate has the 604th longest lifespan of them.
- This species
- Other sharks and rays
- Other classes
Base composition
Whole genome16,910 bp
- GC skew (G − C) / (G + C)
- −0.311
- AT skew (A − T) / (A + T)
- +0.020
Life history
- Maximum lifespan
- 26 years
- Adult weight
- 50.1 kg
- Female sexual maturity
- 8 years
- Litter or clutch size
- 1,260
Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 01834)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,910 bp
Protein-coding11,411 bp
12S rRNA966 bp
16S rRNA1,676 bp
All tRNA1,548 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 43.39% | −0.409 | −0.040 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 44.26% | −0.551 | +0.039 | |||||
| COX1Cytochrome c oxidase subunit I | 1,557 bp | 43.10% | −0.198 | −0.097 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 40.38% | −0.219 | +0.068 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 36.31% | −0.508 | +0.009 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.15% | −0.457 | −0.031 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 45.29% | −0.258 | −0.070 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 47.85% | −0.353 | −0.187 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.80% | −0.468 | −0.152 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 43.09% | −0.398 | −0.031 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 41.39% | −0.421 | 0.000 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 38.92% | −0.495 | +0.413 | |||||
| CYTBCytochrome b | 1,143 bp | 44.44% | −0.402 | −0.096 | |||||
| 12S rRNA12S ribosomal RNA | 966 bp | 40.99% | −0.106 | +0.123 | |||||
| 16S rRNA16S ribosomal RNA | 1,676 bp | 39.56% | −0.098 | +0.147 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU122
UUC115
Leu L18.2%
UUA146
UUG23
CUU136
CUC184
CUA164
CUG40
Ile I8.2%
AUU181
AUC133
Met M4.1%
AUA117
AUG38
Val V5.1%
GUU50
GUC60
GUA61
GUG23
Ser S6.8%
UCU59
UCC70
UCA75
UCG6
AGU21
AGC28
Pro P5.5%
CCU47
CCC73
CCA86
CCG5
Thr T7.7%
ACU57
ACC101
ACA124
ACG12
Ala A7.5%
GCU50
GCC145
GCA84
GCG6
Tyr Y3.1%
UAU53
UAC65
His H2.7%
CAU30
CAC73
Gln Q2.6%
CAA84
CAG14
Asn N3.9%
AAU67
AAC81
Lys K2.2%
AAA77
AAG8
Asp D1.9%
GAU31
GAC41
Glu E2.5%
GAA80
GAG17
Cys C0.6%
UGU9
UGC13
Trp W3.1%
UGA98
UGG19
Arg R1.9%
CGU12
CGC24
CGA26
CGG9
Gly G6.0%
GGU35
GGC84
GGA62
GGG46
Stop 0.2%
UAA7
UAG2
AGA0
AGG0
Genome map
37 annotated features in NC_082808.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (41.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,035 | 966 bp | + | 41.0% |
| tRNA-Val | Transfer RNA | 1,036 | 1,107 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,108 | 2,783 | 1,676 bp | + | 39.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,784 | 2,858 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,859 | 3,833 | 975 bp | + | 43.4% |
| tRNA-Ile | Transfer RNA | 3,834 | 3,903 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,903 | 3,974 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 3,976 | 4,044 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,045 | 5,090 | 1,046 bp | + | 44.3% |
| tRNA-Trp | Transfer RNA | 5,091 | 5,159 | 69 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,161 | 5,229 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,230 | 5,302 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,335 | 5,404 | 70 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,405 | 5,474 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,476 | 7,032 | 1,557 bp | + | 43.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,033 | 7,103 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,104 | 7,172 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,178 | 7,868 | 691 bp | + | 40.4% |
| tRNA-Lys | Transfer RNA | 7,869 | 7,941 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,943 | 8,110 | 168 bp | + | 36.3% |
| ATP6 | Protein-coding gene | 8,101 | 8,784 | 684 bp | + | 44.2% |
| COX3 | Protein-coding gene | 8,787 | 9,572 | 786 bp | + | 45.3% |
| tRNA-Gly | Transfer RNA | 9,574 | 9,643 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,644 | 9,992 | 349 bp | + | 47.9% |
| tRNA-Arg | Transfer RNA | 9,993 | 10,061 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,062 | 10,358 | 297 bp | + | 46.8% |
| ND4 | Protein-coding gene | 10,352 | 11,732 | 1,381 bp | + | 43.1% |
| tRNA-His | Transfer RNA | 11,733 | 11,801 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,802 | 11,869 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,871 | 11,942 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,943 | 13,778 | 1,836 bp | + | 41.4% |
| ND6 | Protein-coding gene | 13,775 | 14,293 | 519 bp | − | 38.9% |
| tRNA-Glu | Transfer RNA | 14,295 | 14,363 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,367 | 15,509 | 1,143 bp | + | 44.4% |
| tRNA-Thr | Transfer RNA | 15,513 | 15,584 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,593 | 15,661 | 69 bp | − | – |