Phaeognathus hubrichti

Red Hills salamander

Maximum lifespan

19.7 yr

AnAge record

mtDNA size

16,294 bp

RefSeq NC_006344.1

GC content

33.71%

Whole genome

Non-coding

959 bp

D-loop 749 bp

Where Red Hills salamander sits among 2,335 species

Whole-genome GC content against maximum lifespan. Red Hills salamander has the 960th longest lifespan of them.

This species
Other amphibians
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,294 bp

GC skew (G − C) / (G + C): −0.247
AT skew (A − T) / (A + T): +0.040

Life history

Maximum lifespan: 19.7 years
Female sexual maturity: 5.5 years
Litter or clutch size: 9

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00170)

About this record

Lifespan source: AnAge build 15
Based on: an animal in captivity
Data quality: acceptable, small sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,294 bp

Protein-coding11,331 bp

12S rRNA924 bp

16S rRNA1,548 bp

All tRNA1,537 bp

D-loop749 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Phaeognathus hubrichti genes

ND1NADH dehydrogenase subunit 1	972 bp	30.9%	34.2%	12.3%	22.6%	34.98%	−0.294	−0.051
ND2NADH dehydrogenase subunit 2	1,038 bp	36.2%	33.6%	8.5%	21.7%	30.15%	−0.438	+0.037
COX1Cytochrome c oxidase subunit I	1,544 bp	30.4%	34.2%	15.0%	20.5%	35.43%	−0.155	−0.059
COX2Cytochrome c oxidase subunit II	688 bp	34.6%	30.8%	12.8%	21.8%	34.59%	−0.261	+0.058
ATP8ATP synthase F0 subunit 8	165 bp	40.6%	32.1%	7.3%	20.0%	27.27%	−0.467	+0.117
ATP6ATP synthase F0 subunit 6	684 bp	33.2%	35.5%	9.6%	21.6%	31.29%	−0.383	−0.034
COX3Cytochrome c oxidase subunit III	784 bp	29.2%	34.7%	15.3%	20.8%	36.10%	−0.152	−0.086
ND3NADH dehydrogenase subunit 3	348 bp	33.0%	35.1%	12.1%	19.8%	31.90%	−0.243	−0.030
ND4LNADH dehydrogenase subunit 4L	297 bp	28.6%	36.7%	11.8%	22.9%	34.68%	−0.320	−0.124
ND4NADH dehydrogenase subunit 4	1,372 bp	33.3%	34.7%	10.5%	21.5%	32.00%	−0.344	−0.020
ND5NADH dehydrogenase subunit 5	1,812 bp	35.1%	34.5%	10.2%	20.3%	30.41%	−0.332	+0.009
ND6NADH dehydrogenase subunit 6	519 bp	45.1%	21.0%	9.6%	24.3%	33.91%	−0.432	+0.364
CYTBCytochrome b	1,141 bp	32.3%	33.0%	12.3%	22.4%	34.71%	−0.293	−0.009
12S rRNA12S ribosomal RNA	924 bp	37.3%	26.0%	16.5%	20.2%	36.69%	−0.103	+0.179
16S rRNA16S ribosomal RNA	1,548 bp	40.1%	26.6%	15.6%	17.7%	33.29%	−0.064	+0.202
D-loopControl region (D-loop)	749 bp	31.9%	33.9%	14.0%	20.2%	34.18%	−0.180	−0.030

Codon usage

Counts per codon, darker is more frequent

Gene

3,786 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%

UUU187

UUC53

Leu L16.1%

UUA278

UUG17

CUU137

CUC42

CUA127

CUG9

Ile I9.2%

AUU297

AUC50

Met M6.6%

AUA228

AUG23

Val V4.5%

GUU71

GUC14

GUA74

GUG11

Ser S7.4%

UCU61

UCC49

UCA115

UCG4

AGU29

AGC21

Pro P5.5%

CCU39

CCC15

CCA150

CCG3

Thr T7.7%

ACU80

ACC62

ACA144

ACG5

Ala A6.6%

GCU64

GCC81

GCA101

GCG3

Tyr Y2.9%

UAU86

UAC23

His H2.4%

CAU45

CAC45

Gln Q2.5%

CAA89

CAG7

Asn N4.3%

AAU100

AAC64

Lys K2.3%

AAA81

AAG5

Asp D1.7%

GAU32

GAC33

Glu E2.6%

GAA87

GAG10

Cys C0.8%

UGU17

UGC15

Trp W2.9%

UGA104

UGG6

Arg R1.8%

CGU10

CGC8

CGA48

CGG2

Gly G5.7%

GGU31

GGC33

GGA140

GGG13

Stop 0.2%

UAA6

UAG1

AGA0

AGG1

Genome map

38 annotated features in NC_006344.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (33.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Phaeognathus hubrichti (NC_006344.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	70	70 bp	+	–
12S rRNA	Ribosomal RNA	71	994	924 bp	+	36.7%
tRNA-Val	Transfer RNA	995	1,064	70 bp	+	–
16S rRNA	Ribosomal RNA	1,065	2,612	1,548 bp	+	33.3%
tRNA-Leu (UUR)	Transfer RNA	2,613	2,687	75 bp	+	–
ND1	Protein-coding gene	2,688	3,659	972 bp	+	35.0%
tRNA-Ile	Transfer RNA	3,659	3,730	72 bp	+	–
tRNA-Gln	Transfer RNA	3,729	3,799	71 bp	−	–
tRNA-Met	Transfer RNA	3,799	3,866	68 bp	+	–
ND2	Protein-coding gene	3,867	4,904	1,038 bp	+	30.2%
tRNA-Trp	Transfer RNA	4,903	4,972	70 bp	+	–
tRNA-Ala	Transfer RNA	4,975	5,043	69 bp	−	–
tRNA-Asn	Transfer RNA	5,045	5,119	75 bp	−	–
tRNA-Cys	Transfer RNA	5,153	5,220	68 bp	−	–
tRNA-Tyr	Transfer RNA	5,219	5,287	69 bp	−	–
COX1	Protein-coding gene	5,289	6,832	1,544 bp	+	35.4%
tRNA-Ser (UCN)	Transfer RNA	6,838	6,908	71 bp	−	–
tRNA-Asp	Transfer RNA	6,909	6,978	70 bp	+	–
COX2	Protein-coding gene	6,980	7,667	688 bp	+	34.6%
tRNA-Lys	Transfer RNA	7,668	7,739	72 bp	+	–
ATP8	Protein-coding gene	7,741	7,905	165 bp	+	27.3%
ATP6	Protein-coding gene	7,896	8,579	684 bp	+	31.3%
COX3	Protein-coding gene	8,579	9,362	784 bp	+	36.1%
tRNA-Gly	Transfer RNA	9,363	9,429	67 bp	+	–
ND3	Protein-coding gene	9,430	9,777	348 bp	+	31.9%
tRNA-Arg	Transfer RNA	9,776	9,843	68 bp	+	–
ND4L	Protein-coding gene	9,844	10,140	297 bp	+	34.7%
ND4	Protein-coding gene	10,134	11,505	1,372 bp	+	32.0%
tRNA-His	Transfer RNA	11,506	11,574	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,575	11,641	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,642	11,712	71 bp	+	–
ND5	Protein-coding gene	11,713	13,524	1,812 bp	+	30.4%
ND6	Protein-coding gene	13,510	14,028	519 bp	−	33.9%
tRNA-Glu	Transfer RNA	14,029	14,096	68 bp	−	–
CYTB	Protein-coding gene	14,101	15,241	1,141 bp	+	34.7%
tRNA-Thr	Transfer RNA	15,242	15,310	69 bp	+	–
tRNA-Pro	Transfer RNA	15,473	15,545	73 bp	−	–
D-loop	Control region	15,546	16,294	749 bp	–	34.2%