Zearaja nasuta
New Zealand rough skate
GC content
41.24%
Whole genome
Non-coding
1,308 bp
D-loop 1,248 bp
Where New Zealand rough skate sits among 2,335 species
Whole-genome GC content against maximum lifespan. New Zealand rough skate has the 1,691st longest lifespan of them.
- This species
- Other sharks and rays
- Other classes
Base composition
Whole genome16,909 bp
- GC skew (G − C) / (G + C)
- −0.304
- AT skew (A − T) / (A + T)
- +0.019
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,909 bp
Protein-coding11,411 bp
12S rRNA966 bp
16S rRNA1,676 bp
All tRNA1,548 bp
D-loop1,248 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 43.80% | −0.396 | −0.015 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 41.97% | −0.554 | +0.058 | |||||
| COX1Cytochrome c oxidase subunit I | 1,557 bp | 42.90% | −0.204 | −0.114 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 38.50% | −0.211 | +0.059 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 35.71% | −0.600 | +0.037 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 41.81% | −0.448 | −0.045 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 46.57% | −0.273 | −0.067 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 45.27% | −0.329 | −0.173 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.13% | −0.460 | −0.113 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 42.43% | −0.372 | −0.052 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 40.90% | −0.414 | +0.006 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 38.34% | −0.487 | +0.425 | |||||
| CYTBCytochrome b | 1,143 bp | 43.66% | −0.387 | −0.081 | |||||
| 12S rRNA12S ribosomal RNA | 966 bp | 42.24% | −0.098 | +0.111 | |||||
| 16S rRNA16S ribosomal RNA | 1,676 bp | 39.20% | −0.105 | +0.142 | |||||
| D-loopControl region (D-loop) | 1,248 bp | 34.54% | −0.271 | −0.006 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU138
UUC102
Leu L17.8%
UUA132
UUG22
CUU142
CUC159
CUA177
CUG47
Ile I8.7%
AUU210
AUC121
Met M4.3%
AUA116
AUG47
Val V4.8%
GUU57
GUC50
GUA57
GUG20
Ser S6.9%
UCU48
UCC73
UCA83
UCG4
AGU20
AGC33
Pro P5.6%
CCU34
CCC84
CCA86
CCG8
Thr T7.6%
ACU62
ACC91
ACA125
ACG13
Ala A7.3%
GCU51
GCC140
GCA82
GCG6
Tyr Y3.2%
UAU51
UAC71
His H2.7%
CAU30
CAC72
Gln Q2.6%
CAA90
CAG10
Asn N3.8%
AAU67
AAC76
Lys K2.3%
AAA79
AAG8
Asp D1.8%
GAU30
GAC38
Glu E2.6%
GAA74
GAG25
Cys C0.6%
UGU11
UGC11
Trp W3.1%
UGA107
UGG12
Arg R1.8%
CGU16
CGC16
CGA32
CGG5
Gly G6.0%
GGU35
GGC90
GGA66
GGG38
Stop 0.2%
UAA8
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_037961.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (41.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,035 | 966 bp | + | 42.2% |
| tRNA-Val | Transfer RNA | 1,036 | 1,107 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,108 | 2,783 | 1,676 bp | + | 39.2% |
| tRNA-Leu (UUR) | Transfer RNA | 2,784 | 2,858 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,859 | 3,833 | 975 bp | + | 43.8% |
| tRNA-Ile | Transfer RNA | 3,834 | 3,903 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,903 | 3,974 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 3,976 | 4,044 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,045 | 5,090 | 1,046 bp | + | 42.0% |
| tRNA-Trp | Transfer RNA | 5,091 | 5,159 | 69 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,161 | 5,229 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,230 | 5,302 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,335 | 5,402 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,403 | 5,472 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,474 | 7,030 | 1,557 bp | + | 42.9% |
| tRNA-Ser (UCN) | Transfer RNA | 7,031 | 7,101 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,102 | 7,170 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,176 | 7,866 | 691 bp | + | 38.5% |
| tRNA-Lys | Transfer RNA | 7,867 | 7,939 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,941 | 8,108 | 168 bp | + | 35.7% |
| ATP6 | Protein-coding gene | 8,099 | 8,782 | 684 bp | + | 41.8% |
| COX3 | Protein-coding gene | 8,785 | 9,570 | 786 bp | + | 46.6% |
| tRNA-Gly | Transfer RNA | 9,572 | 9,641 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,642 | 9,990 | 349 bp | + | 45.3% |
| tRNA-Arg | Transfer RNA | 9,991 | 10,059 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,060 | 10,356 | 297 bp | + | 46.1% |
| ND4 | Protein-coding gene | 10,350 | 11,730 | 1,381 bp | + | 42.4% |
| tRNA-His | Transfer RNA | 11,731 | 11,799 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,800 | 11,868 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,870 | 11,941 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,942 | 13,777 | 1,836 bp | + | 40.9% |
| ND6 | Protein-coding gene | 13,774 | 14,292 | 519 bp | − | 38.3% |
| tRNA-Glu | Transfer RNA | 14,294 | 14,362 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,366 | 15,508 | 1,143 bp | + | 43.7% |
| tRNA-Thr | Transfer RNA | 15,512 | 15,584 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,593 | 15,661 | 69 bp | − | – |
| D-loop | Control region | 15,662 | 16,909 | 1,248 bp | – | 34.5% |