family · mtDNA statistics

Gobiidae

14 species in 13 genera. Every region of their mitochondrial genomes, side by side.

Group

species

46.7%

mean GC, whole genome

SD 2.0, range 43.2–49.9%

16,518

median genome length, bp

Range 16,396–18,639 bp

genera

Regions

GC content of each region across Gobiidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	14	46.74%	2.04	0.044	43.16%Periophthalmus barbarus	46.44%	49.93%Eviota epiphanes	−0.37	0.2
Protein-coding	14	47.55%	2.27	0.048	43.52%Periophthalmus barbarus	47.17%	50.85%Pomatoschistus minutus	−0.31	0.29
All rRNA	14	46.63%	1.33	0.029	44.76%Periophthalmus barbarus	46.56%	49.77%Eviota epiphanes	−0.47	0.09
All tRNA	14	45.73%	1.16	0.025	43.69%Periophthalmus barbarus	46.13%	47.11%Eviota epiphanes	−0.54	0.05
12S rRNA	14	47.40%	1.46	0.031	45.52%Stigmatogobius pleurostigma	47.32%	50.93%Eviota epiphanes	−0.32	0.26
16S rRNA	14	46.20%	1.46	0.032	43.73%Periophthalmus barbarus	46.00%	49.15%Eviota epiphanes	−0.50	0.07
D-loop	13	36.44%	3.01	0.083	29.19%Rhinogobius cliffordpopei	36.39%	39.63%Pomatoschistus minutus	0.47	0.11
ND1	14	48.26%	2.88	0.060	43.79%Boleophthalmus pectinirostris	48.36%	52.62%Rhinogobius cliffordpopei	−0.25	0.38
ND2	14	49.41%	3.38	0.068	43.74%Periophthalmus barbarus	49.45%	55.11%Eviota epiphanes	−0.32	0.27
COX1	14	46.88%	1.88	0.040	44.02%Boleophthalmus pectinirostris	46.54%	50.32%Rhinogobius cliffordpopei	−0.25	0.39
COX2	14	46.02%	2.30	0.050	40.09%Periophthalmus barbarus	46.09%	50.07%Pomatoschistus minutus	−0.02	0.95
ATP8	14	45.25%	3.17	0.070	41.82%Eucyclogobius newberryi	43.96%	53.57%Eviota epiphanes	−0.37	0.2
ATP6	14	46.44%	2.91	0.063	42.08%Periophthalmus barbarus	47.24%	50.29%Rhinogobius cliffordpopei	−0.10	0.74
COX3	14	47.59%	1.90	0.040	43.88%Periophthalmus barbarus	47.67%	50.00%Rhinogobius cliffordpopei	−0.33	0.24
ND3	14	48.54%	3.03	0.062	42.74%Acanthogobius hasta	48.71%	54.15%Rhinogobius cliffordpopei	−0.11	0.7
ND4L	14	50.19%	2.10	0.042	46.80%Periophthalmus barbarus	50.51%	53.54%Acentrogobius pflaumii	−0.29	0.32
ND4	14	48.68%	2.66	0.055	44.10%Periophthalmus barbarus	48.81%	53.22%Rhinogobius cliffordpopei	−0.20	0.5
ND5	14	45.80%	2.20	0.048	42.09%Periophthalmus barbarus	45.74%	50.11%Eviota epiphanes	−0.37	0.19
ND6	14	49.91%	3.48	0.070	45.79%Periophthalmus barbarus	48.75%	56.53%Eviota epiphanes	−0.57	0.03
CYTB	14	47.00%	2.29	0.049	42.07%Boleophthalmus pectinirostris	46.93%	50.18%Eviota epiphanes	−0.37	0.19

Genera of Gobiidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Gobiidae

Rhinogobius	2	47.70%	2.14	0.045	46.19%Rhinogobius similis	47.70%	49.22%Rhinogobius cliffordpopei	–	–
Gillichthys	1	46.28%	–	–	46.28%Gillichthys mirabilis	46.28%	46.28%Gillichthys mirabilis	–	–
Pomatoschistus	1	49.48%	–	–	49.48%Pomatoschistus minutus	49.48%	49.48%Pomatoschistus minutus	–	–
Neogobius	1	46.76%	–	–	46.76%Neogobius melanostomus	46.76%	46.76%Neogobius melanostomus	–	–
Boleophthalmus	1	43.78%	–	–	43.78%Boleophthalmus pectinirostris	43.78%	43.78%Boleophthalmus pectinirostris	–	–
Eucyclogobius	1	46.12%	–	–	46.12%Eucyclogobius newberryi	46.12%	46.12%Eucyclogobius newberryi	–	–
Periophthalmus	1	43.16%	–	–	43.16%Periophthalmus barbarus	43.16%	43.16%Periophthalmus barbarus	–	–
Gobiusculus	1	48.48%	–	–	48.48%Gobiusculus flavescens	48.48%	48.48%Gobiusculus flavescens	–	–
Acanthogobius	1	45.46%	–	–	45.46%Acanthogobius hasta	45.46%	45.46%Acanthogobius hasta	–	–
Acentrogobius	1	47.66%	–	–	47.66%Acentrogobius pflaumii	47.66%	47.66%Acentrogobius pflaumii	–	–
Lesueurigobius	1	46.59%	–	–	46.59%Lesueurigobius friesii	46.59%	46.59%Lesueurigobius friesii	–	–
Eviota	1	49.93%	–	–	49.93%Eviota epiphanes	49.93%	49.93%Eviota epiphanes	–	–
Stigmatogobius	1	45.23%	–	–	45.23%Stigmatogobius pleurostigma	45.23%	45.23%Stigmatogobius pleurostigma	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Gobiidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Gobiidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.