family · mtDNA statistics

Labridae

10 species in 9 genera. Every region of their mitochondrial genomes, side by side.

Group

species

46.9%

mean GC, whole genome

SD 2.0, range 43.6–50.5%

16,680

median genome length, bp

Range 16,494–17,265 bp

genera

Regions

GC content of each region across Labridae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	10	46.89%	2.02	0.043	43.61%Bolbometopon muricatum	47.19%	50.49%Centrolabrus exoletus	−0.40	0.26
Protein-coding	10	47.51%	2.37	0.050	43.92%Calotomus japonicus	47.55%	52.02%Centrolabrus exoletus	−0.44	0.21
All rRNA	10	47.16%	0.85	0.018	45.47%Bolbometopon muricatum	47.23%	48.25%Centrolabrus exoletus	−0.41	0.24
All tRNA	10	45.56%	1.63	0.036	42.49%Calotomus japonicus	45.57%	48.39%Centrolabrus exoletus	−0.24	0.5
12S rRNA	10	48.57%	0.81	0.017	47.30%Bolbometopon muricatum	48.48%	49.95%Calotomus japonicus	−0.40	0.26
16S rRNA	10	46.37%	1.11	0.024	44.44%Bolbometopon muricatum	46.59%	47.51%Centrolabrus exoletus	−0.33	0.36
D-loop	9	40.08%	3.76	0.094	33.43%Bolbometopon muricatum	39.57%	47.95%Cheilinus undulatus	0.07	0.87
ND1	10	49.09%	2.17	0.044	45.44%Calotomus japonicus	48.97%	53.57%Centrolabrus exoletus	−0.24	0.51
ND2	10	49.17%	2.79	0.057	45.74%Calotomus japonicus	48.66%	55.31%Centrolabrus exoletus	−0.42	0.23
COX1	10	47.01%	2.10	0.045	43.58%Calotomus japonicus	47.20%	50.81%Centrolabrus exoletus	−0.34	0.33
COX2	10	45.27%	2.21	0.049	40.67%Bolbometopon muricatum	45.66%	48.63%Ctenolabrus rupestris	−0.48	0.16
ATP8	10	45.00%	3.15	0.070	40.48%Bolbometopon muricatum	44.05%	49.40%Centrolabrus exoletus	−0.32	0.37
ATP6	10	47.06%	2.11	0.045	43.57%Bolbometopon muricatum	47.18%	50.88%Centrolabrus exoletus	−0.34	0.34
COX3	10	48.15%	2.44	0.051	43.06%Calotomus japonicus	48.28%	51.85%Centrolabrus exoletus	−0.23	0.52
ND3	10	48.29%	4.53	0.094	43.18%Bolbometopon muricatum	48.23%	55.68%Centrolabrus exoletus	−0.29	0.41
ND4L	10	48.37%	2.24	0.046	44.78%Bolbometopon muricatum	48.65%	52.19%Centrolabrus exoletus	−0.39	0.26
ND4	10	47.55%	2.51	0.053	43.16%Calotomus japonicus	47.56%	52.28%Centrolabrus exoletus	−0.47	0.17
ND5	10	46.57%	2.81	0.060	42.52%Bolbometopon muricatum	46.47%	52.50%Centrolabrus exoletus	−0.49	0.15
ND6	10	48.17%	2.70	0.056	43.49%Bolbometopon muricatum	48.52%	51.89%Xyrichtys novacula	−0.51	0.13
CYTB	10	47.27%	2.88	0.061	43.03%Bolbometopon muricatum	46.63%	51.80%Ctenolabrus rupestris	−0.44	0.21

Genera of Labridae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Labridae

Scarus	2	46.53%	0.35	0.007	46.29%Scarus forsteni	46.53%	46.78%Scarus schlegeli	–	–
Xyrichtys	1	47.60%	–	–	47.60%Xyrichtys novacula	47.60%	47.60%Xyrichtys novacula	–	–
Chlorurus	1	46.53%	–	–	46.53%Chlorurus sordidus	46.53%	46.53%Chlorurus sordidus	–	–
Centrolabrus	1	50.49%	–	–	50.49%Centrolabrus exoletus	50.49%	50.49%Centrolabrus exoletus	–	–
Ctenolabrus	1	48.25%	–	–	48.25%Ctenolabrus rupestris	48.25%	48.25%Ctenolabrus rupestris	–	–
Bolbometopon	1	43.61%	–	–	43.61%Bolbometopon muricatum	43.61%	43.61%Bolbometopon muricatum	–	–
Cheilinus	1	47.72%	–	–	47.72%Cheilinus undulatus	47.72%	47.72%Cheilinus undulatus	–	–
Choerodon	1	47.73%	–	–	47.73%Choerodon schoenleinii	47.73%	47.73%Choerodon schoenleinii	–	–
Calotomus	1	43.92%	–	–	43.92%Calotomus japonicus	43.92%	43.92%Calotomus japonicus	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Labridae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Labridae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.