family · mtDNA statistics

Cebidae

17 species in 8 genera. Every region of their mitochondrial genomes, side by side.

Group

species

39.8%

mean GC, whole genome

SD 1.2, range 36.9–40.9%

16,528

median genome length, bp

Range 16,246–16,618 bp

genera

Regions

GC content of each region across Cebidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	17	39.82%	1.17	0.029	36.88%Leontopithecus chrysopygus	40.47%	40.91%Leontocebus nigricollis	−0.15	0.57
Protein-coding	17	39.86%	1.35	0.034	36.84%Leontopithecus chrysopygus	40.60%	41.26%Leontocebus nigricollis	−0.28	0.28
All rRNA	17	40.94%	0.64	0.016	39.54%Leontopithecus chrysopygus	40.93%	41.98%Saguinus bicolor	0.05	0.86
All tRNA	17	36.13%	0.75	0.021	34.49%Leontopithecus chrysopygus	36.17%	37.30%Saimiri boliviensis	0.42	0.09
12S rRNA	17	43.32%	0.61	0.014	42.34%Cebus olivaceus	43.49%	44.23%Saimiri boliviensis	−0.19	0.46
16S rRNA	17	39.49%	0.78	0.020	37.60%Leontopithecus chrysopygus	39.47%	40.82%Saguinus bicolor	0.15	0.57
D-loop	17	41.53%	2.10	0.051	34.48%Leontopithecus chrysopygus	42.17%	43.54%Saimiri boliviensis	0.39	0.12
ND1	17	40.96%	1.49	0.036	38.43%Saguinus labiatus	41.68%	43.46%Leontocebus nigricollis	−0.39	0.12
ND2	17	37.46%	1.44	0.039	33.30%Leontopithecus chrysopygus	37.75%	39.29%Callithrix kuhlii	−0.20	0.45
COX1	17	41.45%	1.39	0.034	39.24%Saguinus labiatus	42.00%	43.67%Leontocebus fuscicollis	−0.24	0.35
COX2	17	39.88%	1.32	0.033	36.92%Leontopithecus chrysopygus	40.12%	41.86%Saguinus midas	−0.30	0.24
ATP8	17	31.84%	2.22	0.070	26.57%Leontopithecus chrysopygus	31.88%	34.33%Mico humeralifer	−0.30	0.24
ATP6	17	38.88%	1.33	0.034	34.80%Leontopithecus chrysopygus	39.06%	40.68%Leontocebus nigricollis	−0.23	0.38
COX3	17	43.74%	1.26	0.029	41.20%Leontopithecus chrysopygus	43.62%	45.54%Saguinus geoffroyi	−0.12	0.65
ND3	17	39.34%	2.89	0.073	34.68%Saguinus labiatus	40.17%	43.93%Leontocebus nigricollis	−0.43	0.09
ND4L	17	34.90%	2.93	0.084	29.97%Saguinus labiatus	35.69%	39.73%Saimiri boliviensis	−0.08	0.76
ND4	17	38.82%	1.51	0.039	35.27%Leontopithecus chrysopygus	38.98%	41.09%Saguinus geoffroyi	0.13	0.63
ND5	17	39.16%	1.66	0.042	36.32%Leontopithecus chrysopygus	39.37%	41.14%Leontocebus nigricollis	−0.30	0.24
ND6	17	38.26%	1.13	0.029	36.14%Leontopithecus chrysopygus	38.20%	39.89%Callithrix penicillata	0.15	0.58
CYTB	17	42.47%	1.96	0.046	39.56%Leontopithecus chrysopygus	42.81%	45.35%Callithrix kuhlii	−0.54	0.02

Genera of Cebidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Cebidae

Saguinus	5	39.66%	1.27	0.032	38.25%Saguinus mystax	40.56%	40.62%Saguinus geoffroyi	−0.08	0.9
Cebus	2	39.07%	0.02	0.001	39.05%Cebus olivaceus	39.07%	39.08%Cebus albifrons	–	–
Saimiri	2	40.68%	0.01	0.000	40.67%Saimiri boliviensis	40.68%	40.69%Saimiri sciureus	–	–
Mico	2	40.44%	0.12	0.003	40.35%Mico argentatus	40.44%	40.52%Mico humeralifer	–	–
Leontocebus	2	40.78%	0.18	0.004	40.65%Leontocebus fuscicollis	40.78%	40.91%Leontocebus nigricollis	–	–
Callithrix	2	40.38%	0.13	0.003	40.29%Callithrix penicillata	40.38%	40.47%Callithrix kuhlii	–	–
Sapajus	1	39.07%	–	–	39.07%Sapajus apella	39.07%	39.07%Sapajus apella	–	–
Leontopithecus	1	36.88%	–	–	36.88%Leontopithecus chrysopygus	36.88%	36.88%Leontopithecus chrysopygus	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Cebidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Cebidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.