family · mtDNA statistics

Percidae

22 species in 6 genera. Every region of their mitochondrial genomes, side by side.

Group

species

46.0%

mean GC, whole genome

SD 1.0, range 44.4–47.4%

16,602

median genome length, bp

Range 16,537–16,858 bp

genera

Regions

GC content of each region across Percidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	22	46.00%	0.99	0.022	44.37%Sander lucioperca	46.18%	47.39%Percina maculata	−0.74	7.2 × 10⁻⁵
Protein-coding	22	46.42%	1.30	0.028	44.11%Sander lucioperca	46.56%	48.31%Percina maculata	−0.73	1.2 × 10⁻⁴
All rRNA	22	47.06%	0.48	0.010	45.85%Gymnocephalus cernua	47.00%	47.93%Percina shumardi	−0.46	0.03
All tRNA	22	46.03%	0.54	0.012	44.93%Gymnocephalus cernua	45.94%	47.15%Etheostoma okaloosae	−0.56	0.006
12S rRNA	22	48.79%	0.58	0.012	47.62%Gymnocephalus cernua	48.86%	49.63%Etheostoma okaloosae	−0.57	0.005
16S rRNA	22	46.09%	0.56	0.012	44.85%Gymnocephalus cernua	46.11%	47.04%Percina shumardi	−0.28	0.21
D-loop	20	37.57%	1.62	0.043	34.37%Sander vitreus	37.18%	42.93%Etheostoma microperca	−0.42	0.07
ND1	22	47.24%	1.91	0.040	43.49%Gymnocephalus cernua	47.59%	50.15%Etheostoma blennioides	−0.69	3.5 × 10⁻⁴
ND2	22	47.54%	1.79	0.038	43.59%Sander lucioperca	47.90%	50.10%Etheostoma blennioides	−0.70	2.7 × 10⁻⁴
COX1	22	46.49%	1.55	0.033	43.65%Perca flavescens	46.58%	49.13%Percina shumardi	−0.70	2.7 × 10⁻⁴
COX2	22	43.61%	0.98	0.023	42.26%Sander lucioperca	43.63%	46.45%Etheostoma olmstedi	−0.16	0.48
ATP8	22	43.52%	2.08	0.048	39.29%Etheostoma flabellare	43.75%	47.02%Percina shumardi	−0.26	0.25
ATP6	22	45.69%	1.66	0.036	42.98%Etheostoma zonale	45.50%	48.68%Percina maculata	−0.17	0.44
COX3	22	48.52%	1.43	0.029	44.97%Gymnocephalus cernua	48.92%	51.08%Percina sciera	−0.57	0.006
ND3	22	47.50%	1.76	0.037	43.84%Etheostoma flabellare	47.29%	51.58%Etheostoma gracile	−0.28	0.2
ND4L	22	50.11%	1.94	0.039	46.80%Etheostoma microperca	50.17%	53.54%Percina shumardi	−0.30	0.17
ND4	22	46.26%	1.41	0.030	43.52%Sander lucioperca	46.49%	48.30%Percina shumardi	−0.74	9.3 × 10⁻⁵
ND5	22	44.63%	1.41	0.032	42.20%Gymnocephalus cernua	44.94%	46.71%Percina maculata	−0.74	7.4 × 10⁻⁵
ND6	22	46.77%	1.88	0.040	43.68%Perca flavescens	47.03%	50.57%Etheostoma caeruleum	−0.60	0.003
CYTB	22	47.01%	1.70	0.036	44.70%Sander vitreus	46.84%	50.04%Percina sciera	−0.60	0.003

Genera of Percidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Percidae

Etheostoma	9	46.19%	0.65	0.014	44.78%Etheostoma flabellare	46.21%	47.09%Etheostoma caeruleum	0.03	0.93
Percina	6	47.00%	0.35	0.007	46.52%Percina evides	46.98%	47.39%Percina maculata	0.14	0.79
Sander	3	44.70%	0.30	0.007	44.37%Sander lucioperca	44.77%	44.95%Sander canadensis	–	–
Perca	2	44.76%	0.20	0.004	44.62%Perca flavescens	44.76%	44.90%Perca fluviatilis	–	–
Crystallaria	1	46.14%	–	–	46.14%Crystallaria asprella	46.14%	46.14%Crystallaria asprella	–	–
Gymnocephalus	1	44.55%	–	–	44.55%Gymnocephalus cernua	44.55%	44.55%Gymnocephalus cernua	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Percidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Percidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.