family · mtDNA statistics

Cercopithecidae

38 species in 17 genera. Every region of their mitochondrial genomes, side by side.

Group

species

41.5%

mean GC, whole genome

SD 2.0, range 38.0–43.7%

16,547

median genome length, bp

Range 15,467–16,676 bp

genera

Regions

GC content of each region across Cercopithecidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	38	41.47%	1.95	0.047	38.00%Presbytis melalophos	42.36%	43.68%Papio hamadryas	0.51	0.001
Protein-coding	38	41.43%	2.25	0.054	37.31%Presbytis melalophos	42.43%	44.07%Papio hamadryas	0.52	9.2 × 10⁻⁴
All rRNA	38	42.27%	1.22	0.029	40.20%Trachypithecus francoisi	42.45%	44.01%Macaca radiata	0.44	0.006
All tRNA	38	38.53%	1.43	0.037	35.49%Trachypithecus cristatus	38.73%	40.49%Cercopithecus neglectus	0.38	0.02
12S rRNA	38	43.79%	1.59	0.036	40.61%Pygathrix nemaeus	44.32%	46.91%Cercopithecus neglectus	0.44	0.006
16S rRNA	38	41.39%	1.14	0.027	39.37%Presbytis melalophos	41.18%	43.45%Macaca radiata	0.37	0.02
D-loop	34	43.99%	1.96	0.045	40.46%Trachypithecus phayrei	44.10%	50.00%Cercopithecus neglectus	0.36	0.03
ND1	38	43.16%	2.33	0.054	38.45%Semnopithecus entellus	44.19%	45.97%Macaca fuscata	0.52	7.7 × 10⁻⁴
ND2	38	39.87%	3.00	0.075	34.64%Trachypithecus cristatus	41.27%	43.28%Macaca sinica	0.46	0.004
COX1	38	42.61%	1.82	0.043	39.03%Rhinopithecus roxellana	43.02%	45.38%Macaca tonkeana	0.54	4.4 × 10⁻⁴
COX2	38	41.57%	2.04	0.049	36.99%Presbytis melalophos	42.25%	44.15%Macaca arctoides	0.55	3.2 × 10⁻⁴
ATP8	38	35.97%	4.02	0.112	28.02%Presbytis melalophos	36.72%	42.51%Macaca mulatta	0.52	7.3 × 10⁻⁴
ATP6	38	41.23%	2.34	0.057	36.56%Pygathrix nemaeus	41.63%	44.64%Macaca thibetana	0.49	0.002
COX3	38	43.51%	2.20	0.050	39.16%Rhinopithecus roxellana	44.71%	46.43%Macaca nigra	0.51	9.7 × 10⁻⁴
ND3	38	38.97%	2.25	0.058	34.39%Nasalis larvatus	39.02%	44.06%Papio hamadryas	0.38	0.02
ND4L	38	39.82%	3.18	0.080	32.66%Rhinopithecus roxellana	40.91%	44.78%Macaca sinica	0.42	0.008
ND4	38	40.32%	2.24	0.056	35.34%Presbytis melalophos	41.18%	43.40%Papio hamadryas	0.58	1.3 × 10⁻⁴
ND5	38	40.67%	2.54	0.063	36.64%Rhinopithecus roxellana	41.60%	44.48%Macaca radiata	0.43	0.008
ND6	38	39.88%	2.65	0.066	34.10%Trachypithecus johnii	40.57%	43.94%Macaca arctoides	0.37	0.02
CYTB	38	43.46%	2.18	0.050	38.85%Presbytis melalophos	43.73%	46.36%Macaca arctoides	0.47	0.003

Genera of Cercopithecidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Cercopithecidae

Macaca	13	43.21%	0.25	0.006	42.82%Macaca nemestrina	43.20%	43.63%Macaca radiata	−0.45	0.12
Trachypithecus	6	38.85%	0.18	0.005	38.55%Trachypithecus phayrei	38.91%	39.01%Trachypithecus cristatus	−0.38	0.46
Cercopithecus	3	42.61%	0.20	0.005	42.46%Cercopithecus mitis	42.53%	42.84%Cercopithecus diana	–	–
Mandrillus	2	42.18%	0.13	0.003	42.08%Mandrillus sphinx	42.18%	42.27%Mandrillus leucophaeus	–	–
Semnopithecus	2	39.24%	0.30	0.008	39.03%Semnopithecus entellus	39.24%	39.45%Semnopithecus vetulus	–	–
Allenopithecus	1	40.87%	–	–	40.87%Allenopithecus nigroviridis	40.87%	40.87%Allenopithecus nigroviridis	–	–
Cercocebus	1	41.42%	–	–	41.42%Cercocebus torquatus	41.42%	41.42%Cercocebus torquatus	–	–
Allochrocebus	1	41.97%	–	–	41.97%Allochrocebus lhoesti	41.97%	41.97%Allochrocebus lhoesti	–	–
Chlorocebus	1	42.74%	–	–	42.74%Chlorocebus aethiops	42.74%	42.74%Chlorocebus aethiops	–	–
Colobus	1	40.75%	–	–	40.75%Colobus guereza	40.75%	40.75%Colobus guereza	–	–
Erythrocebus	1	41.27%	–	–	41.27%Erythrocebus patas	41.27%	41.27%Erythrocebus patas	–	–
Nasalis	1	39.12%	–	–	39.12%Nasalis larvatus	39.12%	39.12%Nasalis larvatus	–	–
Papio	1	43.68%	–	–	43.68%Papio hamadryas	43.68%	43.68%Papio hamadryas	–	–
Presbytis	1	38.00%	–	–	38.00%Presbytis melalophos	38.00%	38.00%Presbytis melalophos	–	–
Pygathrix	1	38.69%	–	–	38.69%Pygathrix nemaeus	38.69%	38.69%Pygathrix nemaeus	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Cercopithecidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Cercopithecidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.