family · mtDNA statistics

Sebastidae

45 species in 2 genera. Every region of their mitochondrial genomes, side by side.

Group

species

45.2%

mean GC, whole genome

SD 0.4, range 44.4–46.3%

17,053

median genome length, bp

Range 16,400–17,728 bp

genera

Regions

GC content of each region across Sebastidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	45	45.17%	0.37	0.008	44.44%Sebastes mystinus	45.09%	46.28%Sebastolobus alascanus	0.02	0.89
Protein-coding	45	45.86%	0.32	0.007	44.88%Sebastes minor	45.89%	46.86%Sebastolobus alascanus	0.25	0.1
All rRNA	45	47.60%	0.15	0.003	47.35%Sebastes melanostomus	47.59%	48.01%Sebastes jordani	0.20	0.2
All tRNA	45	45.60%	0.26	0.006	45.04%Sebastes rubrivinctus	45.59%	46.24%Sebastes schlegelii	0.23	0.13
12S rRNA	45	50.13%	0.21	0.004	49.37%Sebastes paucispinis	50.11%	50.53%Sebastes norvegicus	0.02	0.9
16S rRNA	45	46.19%	0.19	0.004	45.89%Sebastes auriculatus	46.13%	46.69%Sebastes jordani	0.22	0.15
D-loop	17	33.33%	1.69	0.051	30.32%Sebastes melanops	33.55%	35.89%Sebastes aleutianus	−0.14	0.58
ND1	45	47.30%	0.59	0.013	46.05%Sebastes minor	47.28%	48.82%Sebastes caurinus	0.12	0.43
ND2	45	47.15%	0.57	0.012	46.08%Sebastes melanops	47.13%	48.66%Sebastolobus alascanus	0.14	0.36
COX1	45	45.45%	0.45	0.010	44.49%Sebastes goodei	45.39%	46.49%Sebastes paucispinis	0.19	0.22
COX2	45	42.71%	0.46	0.011	41.82%Sebastes schlegelii	42.69%	43.70%Sebastes jordani	0.23	0.13
ATP8	45	47.90%	1.04	0.022	44.05%Sebastolobus alascanus	48.21%	49.40%Sebastes emphaeus	0.10	0.52
ATP6	45	44.59%	0.82	0.018	41.96%Sebastes minor	44.74%	46.64%Sebastes paucispinis	0.07	0.63
COX3	45	46.31%	0.52	0.011	45.35%Sebastes mystinus	46.24%	47.64%Sebastes schlegelii	−0.17	0.25
ND3	45	48.19%	0.67	0.014	46.42%Sebastes jordani	48.14%	50.43%Sebastes paucispinis	−0.12	0.42
ND4L	45	47.95%	0.80	0.017	46.46%Sebastes babcocki	47.81%	50.84%Sebastolobus alascanus	0.15	0.31
ND4	45	46.37%	0.63	0.014	45.26%Sebastes minor	46.42%	48.37%Sebastolobus alascanus	0.15	0.34
ND5	45	44.57%	0.52	0.012	42.74%Sebastes minor	44.64%	45.62%Sebastes schlegelii	0.34	0.02
ND6	45	47.88%	1.10	0.023	45.98%Sebastes goodei	48.08%	49.43%Sebastes alutus	0.16	0.3
CYTB	45	44.87%	0.70	0.016	44.00%Sebastes mystinus	44.79%	48.12%Sebastolobus alascanus	0.02	0.89

Genera of Sebastidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Sebastidae

Sebastes	44	45.15%	0.33	0.007	44.44%Sebastes mystinus	45.09%	46.20%Sebastes schlegelii	−0.08	0.61
Sebastolobus	1	46.28%	–	–	46.28%Sebastolobus alascanus	46.28%	46.28%Sebastolobus alascanus	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Sebastidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Sebastidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.