order · mtDNA statistics

Spariformes

22 species in 4 families. Every region of their mitochondrial genomes, side by side.

Group

species

45.4%

mean GC, whole genome

SD 1.4, range 42.7–48.8%

16,643

median genome length, bp

Range 16,174–17,353 bp

families

Regions

GC content of each region across Spariformes, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	22	45.38%	1.36	0.030	42.67%Nemipterus bathybius	45.50%	48.75%Monotaxis grandoculis	0.19	0.39
Protein-coding	22	45.91%	1.35	0.029	43.80%Nemipterus virgatus	45.88%	49.79%Monotaxis grandoculis	0.18	0.43
All rRNA	22	46.51%	1.12	0.024	44.11%Nemipterus bathybius	46.71%	48.39%Monotaxis grandoculis	0.14	0.54
All tRNA	22	45.29%	1.06	0.024	42.71%Nemipterus bathybius	45.55%	46.49%Pagellus acarne	0.40	0.07
12S rRNA	22	48.40%	0.79	0.016	46.97%Acanthopagrus schlegelii	48.24%	50.26%Monotaxis grandoculis	−0.43	0.05
16S rRNA	22	45.44%	1.53	0.034	42.09%Nemipterus bathybius	45.87%	47.35%Monotaxis grandoculis	0.28	0.2
D-loop	17	36.05%	3.47	0.096	27.01%Nemipterus bathybius	36.18%	42.03%Dentex dentex	0.44	0.07
ND1	22	46.92%	1.93	0.041	43.59%Nemipterus randalli	47.28%	51.49%Monotaxis grandoculis	0.18	0.43
ND2	22	48.03%	2.38	0.050	43.50%Nemipterus virgatus	48.18%	52.87%Monotaxis grandoculis	0.37	0.09
COX1	22	45.29%	1.26	0.028	43.17%Acanthopagrus schlegelii	45.18%	48.68%Monotaxis grandoculis	0.02	0.94
COX2	22	44.18%	1.17	0.026	42.40%Nemipterus virgatus	44.14%	47.61%Monotaxis grandoculis	0.12	0.61
ATP8	22	45.68%	2.62	0.057	41.67%Nemipterus randalli	45.24%	51.19%Pagrus pagrus	0.28	0.2
ATP6	22	45.61%	2.10	0.046	42.98%Nemipterus randalli	44.99%	52.27%Monotaxis grandoculis	0.11	0.62
COX3	22	46.68%	1.37	0.029	44.97%Dentex dentex	46.43%	50.96%Monotaxis grandoculis	−0.19	0.4
ND3	22	48.11%	2.42	0.050	43.84%Nemipterus virgatus	48.28%	52.15%Dentex dentex	0.38	0.08
ND4L	22	49.23%	1.50	0.030	46.13%Spicara maena	48.99%	51.52%Dentex dentex	0.31	0.16
ND4	22	46.09%	1.47	0.032	43.61%Nemipterus virgatus	46.20%	48.66%Rhabdosargus sarba	0.23	0.31
ND5	22	44.38%	1.42	0.032	41.44%Nemipterus virgatus	44.29%	48.45%Monotaxis grandoculis	0.15	0.51
ND6	22	44.31%	2.01	0.045	40.61%Dentex angolensis	43.87%	50.00%Monotaxis grandoculis	−0.01	0.97
CYTB	22	45.68%	1.16	0.025	44.26%Pagellus erythrinus	45.40%	48.55%Monotaxis grandoculis	0.01	0.97

Families of Spariformes

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Families of Spariformes

Sparidae	17	45.62%	0.77	0.017	44.09%Acanthopagrus schlegelii	45.55%	46.97%Rhabdosargus sarba	−0.20	0.44
Nemipteridae	3	43.03%	0.34	0.008	42.67%Nemipterus bathybius	43.06%	43.35%Nemipterus randalli	–	–
Centracanthidae	1	44.91%	–	–	44.91%Spicara maena	44.91%	44.91%Spicara maena	–	–
Lethrinidae	1	48.75%	–	–	48.75%Monotaxis grandoculis	48.75%	48.75%Monotaxis grandoculis	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Spariformes

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Spariformes taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.