order · mtDNA statistics

Lutjaniformes

16 species in 2 families. Every region of their mitochondrial genomes, side by side.

Group

species

47.0%

mean GC, whole genome

SD 0.5, range 45.9–47.8%

16,510

median genome length, bp

Range 16,494–16,596 bp

families

Regions

GC content of each region across Lutjaniformes, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	16	46.97%	0.51	0.011	45.91%Lutjanus erythropterus	47.14%	47.81%Diagramma pictum	0.02	0.94
Protein-coding	16	47.82%	0.72	0.015	46.25%Aphareus rutilans	48.13%	48.88%Diagramma pictum	0.06	0.82
All rRNA	16	47.49%	0.46	0.010	46.77%Diagramma pictum	47.45%	48.49%Rhomboplites aurorubens	−0.36	0.18
All tRNA	16	44.72%	0.54	0.012	44.21%Lutjanus erythropterus	44.59%	46.53%Diagramma pictum	−0.10	0.72
12S rRNA	16	48.01%	0.63	0.013	47.15%Lutjanus erythropterus	47.90%	49.06%Lutjanus peru	−0.34	0.2
16S rRNA	16	47.19%	0.62	0.013	45.68%Aphareus rutilans	47.39%	48.26%Rhomboplites aurorubens	−0.22	0.42
D-loop	13	32.22%	14.51	0.450	0.00%Lutjanus analis	37.11%	45.50%Aphareus rutilans	−0.17	0.58
ND1	16	48.69%	1.10	0.023	46.05%Aphareus rutilans	48.97%	50.26%Ocyurus chrysurus	−0.16	0.55
ND2	16	49.76%	0.99	0.020	48.33%Diagramma pictum	49.67%	51.05%Lutjanus analis	0.05	0.87
COX1	16	46.44%	1.01	0.022	44.55%Lutjanus erythropterus	46.29%	49.07%Diagramma pictum	0.14	0.61
COX2	16	44.13%	0.93	0.021	42.69%Aphareus rutilans	44.07%	46.45%Diagramma pictum	0.13	0.64
ATP8	16	46.61%	1.44	0.031	43.45%Lutjanus erythropterus	46.43%	49.40%Lutjanus kasmira	0.10	0.72
ATP6	16	47.18%	1.42	0.030	43.86%Aphareus rutilans	47.33%	49.49%Lutjanus rivulatus	0.25	0.36
COX3	16	48.66%	1.44	0.030	45.35%Aphareus rutilans	48.92%	50.89%Lutjanus ehrenbergii	0.10	0.72
ND3	16	50.32%	1.77	0.035	47.28%Lutjanus vitta	50.43%	53.87%Diagramma pictum	0.06	0.84
ND4L	16	51.54%	0.86	0.017	50.17%Lutjanus fulviflamma	51.68%	53.20%Lutjanus rivulatus	−0.06	0.84
ND4	16	49.03%	1.18	0.024	46.34%Aphareus rutilans	49.35%	50.83%Diagramma pictum	0.08	0.78
ND5	16	46.76%	0.96	0.020	45.02%Lutjanus erythropterus	46.93%	48.61%Ocyurus chrysurus	−0.02	0.94
ND6	16	47.21%	1.48	0.031	45.02%Lutjanus carponotatus	47.09%	50.96%Diagramma pictum	−0.18	0.51
CYTB	16	47.77%	0.61	0.013	46.28%Lutjanus erythropterus	47.81%	48.55%Lutjanus synagris	0.04	0.89

Families of Lutjaniformes

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Families of Lutjaniformes

Lutjanidae	15	46.91%	0.47	0.010	45.91%Lutjanus erythropterus	47.13%	47.41%Ocyurus chrysurus	0.06	0.84
Haemulidae	1	47.81%	–	–	47.81%Diagramma pictum	47.81%	47.81%Diagramma pictum	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Lutjaniformes

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Lutjaniformes taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.