family · mtDNA statistics

Catostomidae

20 species in 11 genera. Every region of their mitochondrial genomes, side by side.

Group

species

44.0%

mean GC, whole genome

SD 1.1, range 42.7–45.8%

16,623

median genome length, bp

Range 16,602–16,627 bp

genera

Regions

GC content of each region across Catostomidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	20	43.96%	1.07	0.024	42.67%Minytrema melanops	43.91%	45.85%Carpiodes carpio	0.56	0.01
Protein-coding	20	43.74%	1.40	0.032	42.14%Moxostoma duquesnii	43.60%	46.27%Carpiodes carpio	0.54	0.01
All rRNA	20	46.59%	0.47	0.010	45.74%Moxostoma erythrurum	46.60%	47.19%Ictiobus bubalus	0.56	0.01
All tRNA	20	45.21%	0.28	0.006	44.55%Erimyzon oblongus	45.33%	45.61%Chasmistes brevirostris	0.41	0.07
12S rRNA	20	49.16%	0.49	0.010	48.26%Erimyzon oblongus	49.26%	49.89%Catostomus microps	0.42	0.06
16S rRNA	20	45.13%	0.58	0.013	44.17%Moxostoma erythrurum	45.04%	46.00%Carpiodes carpio	0.51	0.02
D-loop	19	37.04%	0.87	0.023	34.02%Erimyzon oblongus	37.12%	38.20%Ictiobus bubalus	0.50	0.03
ND1	20	45.06%	1.70	0.038	42.36%Erimyzon oblongus	45.08%	48.10%Carpiodes carpio	0.47	0.04
ND2	20	46.97%	1.97	0.042	42.58%Moxostoma duquesnii	47.27%	50.53%Carpiodes cyprinus	0.42	0.07
COX1	20	43.16%	1.58	0.037	41.39%Minytrema melanops	42.81%	46.42%Ictiobus bubalus	0.58	0.007
COX2	20	42.19%	1.14	0.027	40.81%Hypentelium nigricans	41.82%	44.86%Ictiobus bubalus	0.67	0.001
ATP8	20	40.48%	2.00	0.049	36.31%Erimyzon oblongus	41.07%	43.45%Ictiobus cyprinellus	0.55	0.01
ATP6	20	40.93%	1.72	0.042	36.84%Minytrema melanops	40.60%	43.71%Ictiobus cyprinellus	0.62	0.003
COX3	20	45.08%	1.28	0.028	43.57%Catostomus commersonii	44.77%	47.58%Carpiodes carpio	0.49	0.03
ND3	20	42.70%	1.99	0.047	39.60%Minytrema melanops	42.12%	47.29%Carpiodes carpio	0.30	0.2
ND4L	20	45.59%	1.99	0.044	42.42%Moxostoma erythrurum	45.45%	49.16%Ictiobus cyprinellus	0.35	0.13
ND4	20	43.11%	1.96	0.045	40.09%Moxostoma duquesnii	42.55%	47.03%Carpiodes cyprinus	0.48	0.03
ND5	20	41.96%	1.47	0.035	39.75%Hypentelium nigricans	41.35%	44.75%Carpiodes carpio	0.45	0.05
ND6	20	46.25%	1.76	0.038	43.49%Catostomus macrocheilus	46.46%	50.00%Carpiodes carpio	0.31	0.18
CYTB	20	44.61%	1.01	0.023	42.86%Moxostoma erythrurum	44.79%	46.01%Cycleptus elongatus	0.30	0.2

Genera of Catostomidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Catostomidae

Catostomus	7	43.72%	0.50	0.011	42.93%Catostomus commersonii	43.88%	44.31%Catostomus catostomus	0.15	0.75
Carpiodes	2	45.81%	0.05	0.001	45.77%Carpiodes cyprinus	45.81%	45.85%Carpiodes carpio	–	–
Ictiobus	2	45.75%	0.01	0.000	45.74%Ictiobus cyprinellus	45.75%	45.75%Ictiobus bubalus	–	–
Moxostoma	2	42.76%	0.09	0.002	42.69%Moxostoma duquesnii	42.76%	42.83%Moxostoma erythrurum	–	–
Cycleptus	1	44.14%	–	–	44.14%Cycleptus elongatus	44.14%	44.14%Cycleptus elongatus	–	–
Erimyzon	1	43.06%	–	–	43.06%Erimyzon oblongus	43.06%	43.06%Erimyzon oblongus	–	–
Hypentelium	1	42.94%	–	–	42.94%Hypentelium nigricans	42.94%	42.94%Hypentelium nigricans	–	–
Minytrema	1	42.67%	–	–	42.67%Minytrema melanops	42.67%	42.67%Minytrema melanops	–	–
Deltistes	1	44.08%	–	–	44.08%Deltistes luxatus	44.08%	44.08%Deltistes luxatus	–	–
Thoburnia	1	43.54%	–	–	43.54%Thoburnia rhothoeca	43.54%	43.54%Thoburnia rhothoeca	–	–
Chasmistes	1	44.06%	–	–	44.06%Chasmistes brevirostris	44.06%	44.06%Chasmistes brevirostris	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Catostomidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Catostomidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.