family · mtDNA statistics

Serranidae

34 species in 10 genera. Every region of their mitochondrial genomes, side by side.

Group

species

44.3%

mean GC, whole genome

SD 0.9, range 42.9–46.8%

16,681

median genome length, bp

Range 16,389–17,227 bp

genera

Regions

GC content of each region across Serranidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	34	44.35%	0.91	0.021	42.90%Epinephelus morio	44.34%	46.82%Centropristis striata	−0.15	0.4
Protein-coding	34	44.89%	1.09	0.024	43.31%Cephalopholis argus	45.12%	47.63%Triso dermopterus	−0.10	0.57
All rRNA	34	46.34%	0.77	0.017	44.55%Plectropomus leopardus	46.57%	47.48%Epinephelus latifasciatus	−0.15	0.41
All tRNA	34	43.80%	0.78	0.018	42.34%Cephalopholis argus	43.65%	46.22%Centropristis striata	0.06	0.73
12S rRNA	34	47.97%	0.98	0.021	45.82%Cephalopholis argus	48.11%	50.00%Epinephelus tukula	−0.13	0.45
16S rRNA	34	45.43%	0.79	0.017	43.41%Plectropomus leopardus	45.55%	46.75%Epinephelus latifasciatus	−0.13	0.47
D-loop	31	27.99%	12.74	0.455	0.00%Epinephelus morio	31.82%	38.92%Variola albimarginata	−0.31	0.09
ND1	34	46.65%	1.31	0.028	43.59%Variola louti	46.67%	48.82%Epinephelus merra	−0.03	0.87
ND2	34	46.16%	1.26	0.027	43.92%Epinephelus coioides	45.94%	48.28%Triso dermopterus	−0.46	0.006
COX1	34	44.23%	1.36	0.031	42.10%Epinephelus quoyans	44.10%	48.36%Centropristis striata	−0.17	0.33
COX2	34	42.85%	1.53	0.036	40.09%Plectropomus laevis	43.20%	46.74%Centropristis striata	0.01	0.97
ATP8	34	44.00%	3.42	0.078	35.71%Cephalopholis taeniops	44.05%	51.19%Epinephelus merra	−0.03	0.86
ATP6	34	42.51%	1.73	0.041	38.89%Cephalopholis boenak	42.11%	47.22%Centropristis striata	−0.04	0.82
COX3	34	45.41%	0.99	0.022	43.82%Anyperodon leucogrammicus	45.51%	47.52%Centropristis striata	−0.09	0.6
ND3	34	46.29%	2.06	0.045	42.12%Variola louti	46.00%	49.57%Epinephelus multinotatus	0.10	0.57
ND4L	34	48.20%	1.75	0.036	44.44%Plectropomus laevis	48.15%	51.52%Epinephelus fuscoguttatus	−0.15	0.39
ND4	34	44.65%	1.34	0.030	42.22%Epinephelus quoyans	44.68%	46.92%Triso dermopterus	0.12	0.49
ND5	34	43.89%	1.46	0.033	40.53%Plectropomus leopardus	44.07%	47.31%Triso dermopterus	−0.12	0.49
ND6	34	45.46%	1.95	0.043	42.53%Epinephelus marginatus	45.02%	50.19%Triso dermopterus	−0.04	0.8
CYTB	34	45.58%	1.52	0.033	43.08%Cephalopholis argus	45.57%	48.47%Centropristis striata	0.01	0.98

Genera of Serranidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Serranidae

Epinephelus	14	44.43%	0.88	0.020	42.90%Epinephelus morio	44.57%	45.66%Epinephelus multinotatus	−0.24	0.4
Cephalopholis	8	44.28%	0.75	0.017	43.06%Cephalopholis boenak	44.60%	45.01%Cephalopholis taeniops	−0.20	0.63
Plectropomus	3	43.30%	0.24	0.005	43.10%Plectropomus laevis	43.25%	43.57%Plectropomus areolatus	–	–
Hyporthodus	2	44.15%	0.14	0.003	44.06%Hyporthodus octofasciatus	44.15%	44.25%Hyporthodus niveatus	–	–
Variola	2	43.87%	0.10	0.002	43.80%Variola louti	43.87%	43.94%Variola albimarginata	–	–
Anyperodon	1	44.32%	–	–	44.32%Anyperodon leucogrammicus	44.32%	44.32%Anyperodon leucogrammicus	–	–
Centropristis	1	46.82%	–	–	46.82%Centropristis striata	46.82%	46.82%Centropristis striata	–	–
Cromileptes	1	44.69%	–	–	44.69%Cromileptes altivelis	44.69%	44.69%Cromileptes altivelis	–	–
Triso	1	46.06%	–	–	46.06%Triso dermopterus	46.06%	46.06%Triso dermopterus	–	–
Serranus	1	43.86%	–	–	43.86%Serranus scriba	43.86%	43.86%Serranus scriba	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Serranidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Serranidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.